Constraint Based Approach to the Protein Folding Problem

Further information (Protein folding page) Download Software: COLA for lattice fitting: Download This is the COLA version referred in the paper for WCB 2010. It implements the lattice fitting algorithm described in the paper. Constraint Solver for Lattices (COLA) v 3.0: Download Download instructions This is the current sequential implementation of a constraint solver for lattices. It supports global constraints, rigid blocks, multiple chains and multi domain proteins. Constraint Solver for Lattices (COLA) v 2.1: Download Download instructions It contains the formalization of the Protein Structure Prediction Problem as first described in A New Constraint Solver for 3-D Lattices and its Application to the Protein Folding Problem Tested under Linux, Solaris, Cygwin and Windows XP (using MinGW32 v.3.1.1). Some practical experiments referred by papers (using v. 2.1): Results. 2D HP programs for CPLEX: Generator (in C), Naive encoding generator (in Prolog), Already computed Cplex input files Source files used to compare COLA to SICStus and ECLiPSe